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  "Title": "Urban Habitat Connectivity Analysis",
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  "Description": "Analyse and visualise habitat connectivity in urban\nlandscapes, accounting for barriers and buffer distances.\nIncludes Shiny app for interactive analysis and report\ngeneration. Based on methods developed by Kirk et al (2023)\n<doi:10.1016/j.mex.2022.101989>.",
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    "sf_assign_patches_to_fragments",
    "sf_drop_habitat_under_barrier",
    "sf_fragment_habitat",
    "sf_habitat_buffer",
    "sf_habitat_connectivity",
    "summarise_connectivity",
    "total_habitat_area",
    "urbio_colours",
    "urbio_figure_size",
    "write_connectivity_assets",
    "write_connectivity_report",
    "write_report_data",
    "zip_connectivity_assets",
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      "title": "Connected habitat patch areas for Blue-tongued Lizard",
      "object": "lizard_areas_connected",
      "class": [
        "patch_size_tbl",
        "tbl_df",
        "tbl",
        "data.frame"
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        "area"
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      "table": true,
      "tojson": true
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      "title": "Add patch area layer",
      "topics": [
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      "page": "aggregate_connected_patches",
      "title": "Aggregate connected patch areas",
      "topics": [
        "aggregate_connected_patches"
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    {
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      "title": "Assign patches to fragments",
      "topics": [
        "assign_patches_to_fragments"
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    {
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      "title": "Clean any spatial data layer (shape file)",
      "topics": [
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    {
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      "title": "Convert color name to hexadecimal",
      "topics": [
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    {
      "page": "compare_connectivity",
      "title": "Compare the connectivity of two scenarios",
      "topics": [
        "compare_connectivity"
      ]
    },
    {
      "page": "compare_scenarios",
      "title": "Compare several scenarios against one baseline",
      "topics": [
        "compare_scenarios"
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    },
    {
      "page": "connectivity_display",
      "title": "Prepare a result for display",
      "topics": [
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        "connectivity_display.compare_connectivity",
        "connectivity_display.connectivity",
        "connectivity_display.default",
        "connectivity_display.patch_size_tbl"
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    {
      "page": "connectivity_file_stem",
      "title": "The name to give a download: species and date",
      "topics": [
        "connectivity_file_stem"
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    },
    {
      "page": "connectivity_probability",
      "title": "Calculate connectivity probability",
      "topics": [
        "connectivity_probability"
      ]
    },
    {
      "page": "connectivity_report_data",
      "title": "Everything one connectivity analysis produces",
      "topics": [
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      "title": "Create barrier mask",
      "topics": [
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      "page": "display_ids",
      "title": "Which display columns identify a row rather than measure it",
      "topics": [
        "display_ids"
      ]
    },
    {
      "page": "drop_habitat_under_barrier",
      "title": "Remove habitat under barriers",
      "topics": [
        "drop_habitat_under_barrier"
      ]
    },
    {
      "page": "effective_mesh_size",
      "title": "Calculate effective mesh size",
      "topics": [
        "effective_mesh_size"
      ]
    },
    {
      "page": "empty_grid",
      "title": "Create Empty terra raster grid",
      "topics": [
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      ]
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    {
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      "title": "Lizard Habitat and Barrier Data from Melbourne.",
      "topics": [
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        "example_barrier",
        "example_barrier_scenario",
        "example_barrier_shp",
        "example_habitat"
      ]
    },
    {
      "page": "example-wren-data",
      "title": "Fair Wren Habitat, Barrier, and scenario Data from City of Knox.",
      "topics": [
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        "example_wren_barrier",
        "example_wren_barrier_scenario",
        "example_wren_habitat",
        "example_wren_habitat_scenario"
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    },
    {
      "page": "format_resolution",
      "title": "Format a raster resolution for reading",
      "topics": [
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    },
    {
      "page": "fragment_habitat",
      "title": "Fragment habitat",
      "topics": [
        "fragment_habitat"
      ]
    },
    {
      "page": "generate_connectivity_report",
      "title": "Render a connectivity report",
      "topics": [
        "generate_connectivity_report"
      ]
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    {
      "page": "gg_barrier_habitat_interpatch_dist",
      "title": "Plot barrier, habitat, and interpatch distance layers",
      "topics": [
        "gg_barrier_habitat_interpatch_dist"
      ]
    },
    {
      "page": "gg_layer",
      "title": "Plot one layer on its own",
      "topics": [
        "gg_layer"
      ]
    },
    {
      "page": "habitat_buffer",
      "title": "Buffer habitat raster",
      "topics": [
        "habitat_buffer"
      ]
    },
    {
      "page": "habitat_connectivity",
      "title": "Calculate habitat connectivity using terra",
      "topics": [
        "habitat_connectivity"
      ]
    },
    {
      "page": "habitat_connectivity_comparison",
      "title": "Compare habitat connectivity of a scenario against a baseline",
      "topics": [
        "habitat_connectivity_comparison"
      ]
    },
    {
      "page": "habitat_connectivity_full",
      "title": "Calculate habitat connectivity with visualization data",
      "topics": [
        "habitat_connectivity_full"
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    {
      "page": "habitat_connectivity_scenarios",
      "title": "Compare several scenarios against one baseline, starting from layers",
      "topics": [
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      "title": "Connected habitat patch areas for Blue-tongued Lizard",
      "topics": [
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      ]
    },
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      "page": "mean_patch_size",
      "title": "Calculate mean patch size",
      "topics": [
        "mean_patch_size"
      ]
    },
    {
      "page": "n_patches",
      "title": "Count number of habitat patches",
      "topics": [
        "n_patches"
      ]
    },
    {
      "page": "new_patch_size_tbl",
      "title": "A set of connected habitat patches",
      "topics": [
        "new_patch_size_tbl",
        "patch_size_tbl"
      ]
    },
    {
      "page": "onto_grid",
      "title": "Put a layer on a grid, whichever form it arrives in",
      "topics": [
        "onto_grid"
      ]
    },
    {
      "page": "patch_sizes",
      "title": "Extract the per-patch tables from a 'connectivity' object",
      "topics": [
        "patch_sizes"
      ]
    },
    {
      "page": "pc-getters",
      "title": "Metadata from a 'patch_size_tbl' object",
      "topics": [
        "pc-getters",
        "pc_interpatch_distance",
        "pc_patches",
        "pc_res",
        "pc_species"
      ]
    },
    {
      "page": "plot_barrier_habitat_interpatch_dist",
      "title": "Save barrier habitat interpatch distance plot",
      "topics": [
        "plot_barrier_habitat_interpatch_dist"
      ]
    },
    {
      "page": "plot_connectivity",
      "title": "Plot connectivity metrics across interpatch distances",
      "topics": [
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      ]
    },
    {
      "page": "plot_patches",
      "title": "Plot connected habitat patches",
      "topics": [
        "plot_patches"
      ]
    },
    {
      "page": "prepare_rasters",
      "title": "Prepare habitat and barrier rasters",
      "topics": [
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